Definition at line 48 of file Fit.java.
Public Member Functions | |
| Fit (int newFitId) throws JetWebException | |
| Fit (Model newmodel, PlotSelection newselection) throws JetWebException | |
| Date | getDate () throws JetWebException |
| void | setDate (Date d) |
| void | setId (int id) |
| int | getId () |
| double | getScale () throws JetWebException |
| void | setScale (double d) |
| PlotSelection | getSelection () |
| Model | getModel () throws JetWebException |
| PlotSelection | getPlotSelection () throws JetWebException |
| void | setPlotSelection (PlotSelection sel) |
| void | setModelId (int newId) |
| boolean | isValid () throws JetWebException |
| Map< Integer, Paper > | getMCPapers () throws JetWebException |
| HashMap< Integer, CombinedPaper > | getPapers () throws JetWebException |
| void | setChi2 (double[] chi2) |
| double[] | getChi2 () throws JetWebException |
| double[] | getChi2 (PlotSelection newSelection, MCProcessType proc) throws JetWebException |
| double[] | getChi2 (PlotSelection newSelection) throws JetWebException |
| double[] | getChi2 (MCProcessType proc) throws JetWebException |
| void | zero () |
| void | update (boolean force) throws JetWebException |
| boolean | retrieve () throws JetWebException |
| synchronized boolean | store () throws JetWebException |
Static Public Member Functions | |
| void | delete (int fitId) |
| List< Fit > | getFits (final ResultSearchPattern pattern, final PlotSelection selection, final String sort) throws JetWebException |
| Vector< Fit > | getFits (Model model) throws JetWebException |
Private Member Functions | |
| void | doFit (PlotSelection defaultSumPlots) throws JetWebException |
| void | populatePapers () throws JetWebException |
| void | populateMCPapers () throws JetWebException |
| void | insertPlots () throws JetWebException |
| void | init () throws JetWebException |
| void | forceUpdate () |
| void | fill () throws JetWebException |
Private Attributes | |
| Model | model |
| int | modelId |
| PlotSelection | selection |
| Map< Integer, Paper > | mcPapers = new HashMap<IntegerPaper>() |
| HashMap< Integer, CombinedPaper > | papers_ |
| int | fitId = -1 |
| boolean | valid_ = false |
| Date | date |
| double | bestScale |
| boolean | forceUpdate_ = false |
| double[] | chi2 = {0.0, 0.0} |
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Create a new Fit using the input fitId
Definition at line 72 of file Fit.java. References Fit.fitId, and Fit.init(). Referenced by Fit.getFits().
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Create a new Fit using a specified data set.
Definition at line 86 of file Fit.java. References PlotSelection.clone(), PlotSelection.getFitPlots(), Fit.getId(), PlotSelection.getId(), Model.getId(), PlotSelection.getSumPlots(), Fit.init(), PlotSelection.isAvailable(), Fit.model, Fit.modelId, Fit.selection, PlotSelection.setFitPlots(), and PlotSelection.setSumPlots(). 00087 {
00088
00089 model=newmodel;
00090 modelId=model.getId();
00091
00092 selection=(PlotSelection)newselection.clone();
00093
00094 init();
00095
00096 // Check the required plots are available and get the chi2/dof for them.
00097 if (!selection.isAvailable(model)){
00098
00099 System.out.println
00100 ("JM: plot selection is not available in this model");
00101
00102 throw new JetWebFitException
00103 ("Requested plots not available for model, Id:"
00104 +model.getId(),"");
00105 }
00106
00107 // Find the cross section set matching this PlotSelection.
00108 try {
00109 int cssId = selection.getId();
00110 if (cssId<0) {
00111 System.out.println
00112 ("Error: could not allocate cross section set for this fit."+cssId);
00113 throw new JetWebException
00114 ("Error: could not allocate cross section set for this fit.","fit = "+getId());
00115 }
00116 } catch (JetWebException e) {
00117 System.out.println("Error: could not allocate cross section set for this fit."+e);
00118 throw e;
00119 }
00120
00121 // There are two types of plots in the PlotSelection. Those to
00122 // be included int the reported Chi2 Sum, and those to be used
00123 // to determine the normalisation of the MC in the fit. Only
00124 // the latter really distinguishes two completely different
00125 // Fits, since the former can be easily recalculated on the
00126 // fly. Thus to determine whether or not this Fit has already
00127 // been done, we search using a PlotSelection which has the
00128 // "Sum" plots set to the default value, but the "Fit" plots
00129 // as given in the input PlotSelection.
00130 //
00131 PlotSelection defaultSelection = new PlotSelection();
00132 //defaultSelection.setSumDefault();
00133 defaultSelection.setSumPlots(selection.getSumPlots());
00134 defaultSelection.setFitPlots(selection.getFitPlots());
00135
00136 System.out.println("Successfully made fit for model "+newmodel);
00137
00138 return;
00139 }
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Completely delete this fit from the database, and delete the associated files. Definition at line 535 of file Fit.java. References Fit.fitId. 00535 {
00536
00537 System.out.println("Fit: Removing Fit "+fitId);
00538 File dir = new File(JetWebConfig.rootDirectory
00539 +"/"+JetWebConfig.plotCacheDirName
00540 +"/"+fitId);
00541 try {
00542 FileUtils.deleteDirectory(dir);
00543 DBFitManager.deleteAll(fitId);
00544 } catch (Exception e) {
00545 System.out.println("Failed in attempt to delete fit"+e);
00546 e.printStackTrace();
00547 }
00548
00549 }
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Send a Vector of Papers. Do the fit for all Papers in the Vector for which the Paper is active. Definition at line 247 of file Fit.java. References Fit.bestScale, Fit.chi2, Paper.fit(), Fit.fitId, Paper.fixFit(), Paper.getFitChi2(), Paper.getId(), Fit.mcPapers, and Fit.papers_. Referenced by Fit.fill(). 00247 {
00248
00249 System.out.println("Fit: Starting fit "+fitId);
00250
00251 double start = JetWebConfig.lowScale;
00252 double stop = JetWebConfig.highScale;
00253 double increment = JetWebConfig.scaleIncrement;
00254 Double chi2min = Double.POSITIVE_INFINITY;
00255 bestScale = 0;
00256 //doing the fit is much nicer with CombinedPapers. Not used yet.
00257
00258
00259 while(start<=stop){
00260 double chi2 = 0.0;
00261 for(CombinedPaper paper: papers_.values()){
00262 paper.setScale(start);
00263 chi2 = chi2 + paper.getFitChi2(defaultSumPlots);
00264 }
00265 if(chi2<chi2min){
00266 chi2min = chi2;
00267 bestScale = start;
00268
00269 }
00270 start = start + increment;
00271 }
00272
00273 //Set the best scale for the papers and re-calculate the chi2
00274 //Could do this by keeping a copy of the papers when the best scale
00275 //is found. Would need a deep copy of the paper and to copy the
00276 //paper each time a better scale is found so may not even be
00277 //faster
00278
00279 for(CombinedPaper paper: papers_.values()){
00280 paper.setScale(bestScale);
00281 paper.getFitChi2(defaultSumPlots);
00282 //papers_.put(paper.getRealPaper().getId(), paper);
00283 }
00284
00285 Map<Integer,Paper> dataPapers = new HashMap<Integer,Paper>();
00286 Map<Integer,Paper> scaledPapers = new HashMap<Integer,Paper>();
00287
00288 // Get the Vector of Data Papers which match these.
00289 for (Paper mcPaper : mcPapers.values()) {
00290 Paper dataPaper = PaperBank.getPaper(mcPaper.getId());
00291 dataPapers.put(new Integer(dataPaper.getId()),dataPaper);
00292 }
00293
00294 while (start<=stop){
00295
00296 double chi2=0;
00297 for (Paper mcPaper : mcPapers.values()){
00298 Paper dataPaper = dataPapers.get(new Integer(mcPaper.getId()));
00299 Paper tmpPaper = mcPaper.fit
00300 (dataPaper,start,defaultSumPlots,false);
00301 chi2=chi2+tmpPaper.getFitChi2()[0];
00302 //System.out.println("chi2,scale"+chi2+","+start);
00303 }
00304
00305 if (chi2<chi2min){
00306 chi2min=chi2;
00307 bestScale=start;
00308 }
00309
00310 start = start+increment;
00311
00312 }
00313
00314 System.out.println("Have fit. Now adjust mcPapers to use the correct scale.");
00315 for (Paper mcPaper : mcPapers.values()){
00316 Paper dataPaper = dataPapers.get(new Integer(mcPaper.getId()));
00317 mcPaper = mcPaper.fit(dataPaper,bestScale,defaultSumPlots,true);
00318 mcPaper.fixFit(this);
00319 scaledPapers.put(new Integer(mcPaper.getId()),mcPaper);
00320 }
00321
00322 // Replace the old mcPapers by the new ones.
00323 mcPapers = scaledPapers;
00324 System.out.println("Best scale = "+bestScale);
00325
00326 }
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Definition at line 843 of file Fit.java. References Fit.doFit(), Fit.fitId, Fit.forceUpdate_, Fit.mcPapers, Fit.populateMCPapers(), Fit.populatePapers(), Fit.retrieve(), Fit.selection, Fit.store(), and Fit.valid_. Referenced by Fit.getChi2(), Fit.getDate(), Fit.getMCPapers(), Fit.getModel(), Fit.getPapers(), Fit.getPlotSelection(), Fit.getScale(), Fit.isValid(), and Fit.update(). 00843 {
00844
00845 if (valid_) {return;}
00846
00847 // Search DB for a fit either with this id, or associated with
00848 // this model and cross section set. Regenerate the fit if
00849 // data has been added to the model since the fit was last
00850 // remade.
00851 boolean uptodate = retrieve();
00852
00853 valid_=true;
00854
00855 System.out.println("Fit "+fitId+" up to date? "+uptodate);
00856
00857 if ( !uptodate || forceUpdate_ ){
00858
00859 forceUpdate_=false;
00860
00861 // (Re)do the fit.
00862 populateMCPapers();
00863 populatePapers();
00864
00865 doFit(selection);
00866
00867 // store it
00868 store();
00869
00870 // (Re)write the graphics files
00871 HTMLPaperWriter.writeGraphics(mcPapers,this);
00872 }
00873 }
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If set, the fit will be updated whether the DB thinks it is up to date or not. Definition at line 554 of file Fit.java. References Fit.forceUpdate_, and Fit.valid_. 00554 {
00555 forceUpdate_ = true;
00556 valid_ = false;
00557 }
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Returns the total chi2 and DoF for the plots consistent with the input MCProcessType Definition at line 518 of file Fit.java. References Fit.fill(), and Fit.getChi2().
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Returns the total chi2 and DoF for the list of plots contained in the input PlotSelection. Definition at line 507 of file Fit.java. References Fit.fill(), and Fit.getChi2().
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Returns the total chi2 and DoF for the list of plots contained in the input PlotSelection and matching the input MCProcessType Definition at line 446 of file Fit.java. References Fit.fill(), Fit.getChi2(), Fit.getId(), DataPlot.getId(), Model.getRunSeries(), PlotSelection.getSumPlots(), DataPlot.isPredictedBy(), Fit.model, and Fit.selection. 00447 {
00448
00449 fill();
00450
00451 if (newSelection == null && proc == null){
00452 return getChi2();
00453 } else if (proc == null){
00454
00455 double[] newChi2 = {0.0, 0.0};
00456 double[] tmpChi2 = {0.0, 0.0};
00457 Iterator<DataPlot> plots = newSelection.getSumPlots().iterator();
00458 while (plots.hasNext()){
00459 DataPlot plot = plots.next();
00460 tmpChi2 = DataPlot.getChi2(plot.getId(),getId());
00461 newChi2[0]+=tmpChi2[0];
00462 newChi2[1]+=tmpChi2[1];
00463 }
00464 return newChi2;
00465 }
00466
00467
00468 Iterator<DataPlot> plots;
00469 if (newSelection == null) {
00470 plots = selection.getSumPlots().iterator();
00471 } else {
00472 plots = newSelection.getSumPlots().iterator();
00473 }
00474
00475 double[] newChi2 = {0.0, 0.0};
00476 double[] tmpChi2 = {0.0, 0.0};
00477
00478 try {
00479 Vector<RunSeries> rsVector = model.getRunSeries(proc);
00480
00481 while (plots.hasNext()){
00482 DataPlot plot = plots.next();
00483 Enumeration<RunSeries> rsList = rsVector.elements();
00484 boolean notFound = true;
00485 while (rsList.hasMoreElements() && notFound){
00486 RunSeries runSeries = rsList.nextElement();
00487 if (plot.isPredictedBy(runSeries)){
00488 tmpChi2 = DataPlot.getChi2(plot.getId(),getId());
00489 newChi2[0]+=tmpChi2[0];
00490 newChi2[1]+=tmpChi2[1];
00491 notFound = false;
00492 }
00493 }
00494 }
00495 } catch (JetWebException j) {
00496 System.out.println(j);
00497 }
00498
00499 return newChi2;
00500
00501 }
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Returns the total chi2 and DoF for the list of plots specified by the internal plotSelection. Definition at line 421 of file Fit.java. References Fit.chi2, DataPlot.chi2, Fit.fill(), Fit.getId(), DataPlot.getId(), PlotSelection.getSumPlots(), and Fit.selection. Referenced by Fit.getChi2(). 00421 {
00422
00423 fill();
00424
00425 if (this.chi2[0]>0) {
00426 return this.chi2;
00427 } else {
00428
00429 double[] chi2 = {0.0, 0.0};
00430 Iterator<DataPlot> plots = selection.getSumPlots().iterator();
00431 while (plots.hasNext()){
00432 DataPlot plot = plots.next();
00433 chi2 = DataPlot.getChi2(plot.getId(),getId());
00434 this.chi2[0]+=chi2[0];
00435 this.chi2[1]+=chi2[1];
00436 }
00437
00438 return this.chi2;
00439 }
00440 }
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Date of the fit Definition at line 142 of file Fit.java. References Fit.fill(). Referenced by Fit.getFits(). 00142 {
00143 fill();
00144 return date;
00145 }
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Return all the fits associated with the input Model. Definition at line 833 of file Fit.java. References Fit.model. 00833 {
00834
00835 return DBFitManager.select(model);
00836
00837 }
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Returns a list of results matching a given ResultSearchPattern and given PlotSelection.
Definition at line 653 of file Fit.java. References Fit.Fit(), ResultSearchPattern.getConsistentModels(), Fit.getDate(), Fit.getId(), Fit.getModel(), ResultSearchPattern.getPthat(), Fit.isValid(), Fit.model, and Fit.selection. 00655 {
00656
00657 List<Fit> fitList = new ArrayList<Fit>();
00658
00659 System.out.println("Fit: Looking for models for "+pattern.getGenerator());
00660
00661 // Build a list of Models which are consistent with this ResultSearchPattern
00662 Collection<Model> modelList = pattern.getConsistentModels();
00663
00664 // Build Fits from the models and the cross section set.
00665 for (Model model : modelList){
00666 try {
00667 Fit fit = new Fit(model, selection);
00668 if (fit.isValid()) { fitList.add(fit); }
00669 } catch (JetWebFitException e) {
00670 // Come here if the required plots aren't available.
00671 System.out.println("Fit: found a model, but with insufficient data.");
00672 }
00673 }
00674
00675 //sort the fitList according to the "sort" input
00676 Comparator listSort = new Comparator() {
00677 public int compare(Object o1, Object o2) {
00678 Fit j1 = (Fit)o1;
00679 Fit j2 = (Fit)o2;
00680 Model m1 =null;
00681 Model m2 =null;
00682 try {
00683 m1 = j1.getModel();
00684 } catch (JetWebException e){
00685 return -1;
00686 }
00687 try {
00688 m2 = j2.getModel();
00689 } catch (JetWebException e){
00690 return 1;
00691 }
00692 int sortResult=0;
00693 try {
00694 if (sort.equals(HTMLUtils.PTHAT)){
00695 sortResult = m2.getPthat().compareTo(m1.getPthat());
00696 } else if (sort.equals(HTMLUtils.DATE)){
00697 sortResult = j1.getDate().compareTo(j2.getDate());
00698
00699 /*
00700 } else if (sort.equals(HTMLUtils.CHI2ALL)){
00701 CutBand band1 = (CutBand)j1.bands.get(CutBand.ALL);
00702 CutBand band2 = (CutBand)j2.bands.get(CutBand.ALL);
00703 sortResult = (new Double(band2.getChi2Total()/band2.getDOFTotal()))
00704 .compareTo((new Double(band1.getChi2Total()/band1.getDOFTotal())));
00705 } else if (sort.equals(HTMLUtils.CHI2HIGH)){
00706 CutBand band1 = (CutBand)j1.bands.get(CutBand.HI);
00707 CutBand band2 = (CutBand)j2.bands.get(CutBand.HI);
00708 sortResult = (new Double(band2.getChi2Total()/band2.getDOFTotal()) )
00709 .compareTo((new Double(band1.getChi2Total()/band1.getDOFTotal())));
00710 } else if (sort.equals(HTMLUtils.CHI2LOW)){
00711 CutBand band1 = (CutBand)j1.bands.get(CutBand.LO);
00712 CutBand band2 = (CutBand)j2.bands.get(CutBand.LO);
00713 sortResult = (new Double(band2.getChi2Total()/band2.getDOFTotal()) )
00714 .compareTo((new Double(band1.getChi2Total()/band1.getDOFTotal())));
00715 } else if (sort.equals(HTMLUtils.CHI2SHAPE)){
00716 CutBand band1 = (CutBand)j1.bands.get(CutBand.SHAPE);
00717 CutBand band2 = (CutBand)j2.bands.get(CutBand.SHAPE);
00718 sortResult = (new Double(band2.getChi2Total()/band2.getDOFTotal()) )
00719 .compareTo((new Double(band1.getChi2Total()/band1.getDOFTotal())));
00720 } else if (sort.equals(HTMLUtils.CHI2CHARM)){
00721 CutBand band1 = (CutBand)j1.bands.get(CutBand.CHARM);
00722 CutBand band2 = (CutBand)j2.bands.get(CutBand.CHARM);
00723 sortResult = (new Double(band2.getChi2Total()/band2.getDOFTotal()) )
00724 .compareTo((new Double(band1.getChi2Total()/band1.getDOFTotal())));
00725
00726 } else if (sort.equals(HTMLUtils.CHI2ALLEP)){
00727 CutBand band1 = (CutBand)j1.bands.get(CutBand.ALL);
00728 CutBand band2 = (CutBand)j2.bands.get(CutBand.ALL);
00729 sortResult = (new Double(band2.getChi2Ep()/band2.getDOFEp()))
00730 .compareTo((new Double(band1.getChi2Ep()/band1.getDOFEp())));
00731 } else if (sort.equals(HTMLUtils.CHI2HIGHEP)){
00732 CutBand band1 = (CutBand)j1.bands.get(CutBand.HI);
00733 CutBand band2 = (CutBand)j2.bands.get(CutBand.HI);
00734 sortResult = (new Double(band2.getChi2Ep()/band2.getDOFEp()) )
00735 .compareTo((new Double(band1.getChi2Ep()/band1.getDOFEp())));
00736 } else if (sort.equals(HTMLUtils.CHI2LOWEP)){
00737 CutBand band1 = (CutBand)j1.bands.get(CutBand.LO);
00738 CutBand band2 = (CutBand)j2.bands.get(CutBand.LO);
00739 sortResult = (new Double(band2.getChi2Ep()/band2.getDOFEp()) )
00740 .compareTo((new Double(band1.getChi2Ep()/band1.getDOFEp())));
00741 } else if (sort.equals(HTMLUtils.CHI2SHAPEEP)){
00742 CutBand band1 = (CutBand)j1.bands.get(CutBand.SHAPE);
00743 CutBand band2 = (CutBand)j2.bands.get(CutBand.SHAPE);
00744 sortResult = (new Double(band2.getChi2Ep()/band2.getDOFEp()) )
00745 .compareTo((new Double(band1.getChi2Ep()/band1.getDOFEp())));
00746 } else if (sort.equals(HTMLUtils.CHI2CHARMEP)){
00747 CutBand band1 = (CutBand)j1.bands.get(CutBand.CHARM);
00748 CutBand band2 = (CutBand)j2.bands.get(CutBand.CHARM);
00749 sortResult = (new Double(band2.getChi2Ep()/band2.getDOFEp()) )
00750 .compareTo((new Double(band1.getChi2Ep()/band1.getDOFEp())));
00751
00752 } else if (sort.equals(HTMLUtils.CHI2ALLEE)){
00753 CutBand band1 = (CutBand)j1.bands.get(CutBand.ALL);
00754 CutBand band2 = (CutBand)j2.bands.get(CutBand.ALL);
00755 sortResult = (new Double(band2.getChi2Ee()/band2.getDOFEe()))
00756 .compareTo((new Double(band1.getChi2Ee()/band1.getDOFEe())));
00757 } else if (sort.equals(HTMLUtils.CHI2HIGHEE)){
00758 CutBand band1 = (CutBand)j1.bands.get(CutBand.HI);
00759 CutBand band2 = (CutBand)j2.bands.get(CutBand.HI);
00760 sortResult = (new Double(band2.getChi2Ee()/band2.getDOFEe()) )
00761 .compareTo((new Double(band1.getChi2Ee()/band1.getDOFEe())));
00762 } else if (sort.equals(HTMLUtils.CHI2LOWEE)){
00763 CutBand band1 = (CutBand)j1.bands.get(CutBand.LO);
00764 CutBand band2 = (CutBand)j2.bands.get(CutBand.LO);
00765 sortResult = (new Double(band2.getChi2Ee()/band2.getDOFEe()) )
00766 .compareTo((new Double(band1.getChi2Ee()/band1.getDOFEe())));
00767 } else if (sort.equals(HTMLUtils.CHI2SHAPEEE)){
00768 CutBand band1 = (CutBand)j1.bands.get(CutBand.SHAPE);
00769 CutBand band2 = (CutBand)j2.bands.get(CutBand.SHAPE);
00770 sortResult = (new Double(band2.getChi2Ee()/band2.getDOFEe()) )
00771 .compareTo((new Double(band1.getChi2Ee()/band1.getDOFEe())));
00772 } else if (sort.equals(HTMLUtils.CHI2CHARMEE)){
00773 CutBand band1 = (CutBand)j1.bands.get(CutBand.CHARM);
00774 CutBand band2 = (CutBand)j2.bands.get(CutBand.CHARM);
00775 sortResult = (new Double(band2.getChi2Ee()/band2.getDOFEe()) )
00776 .compareTo((new Double(band1.getChi2Ee()/band1.getDOFEe())));
00777
00778 } else if (sort.equals(HTMLUtils.CHI2ALLPP)){
00779 CutBand band1 = (CutBand)j1.bands.get(CutBand.ALL);
00780 CutBand band2 = (CutBand)j2.bands.get(CutBand.ALL);
00781 sortResult = (new Double(band2.getChi2Pp()/band2.getDOFPp()))
00782 .compareTo((new Double(band1.getChi2Pp()/band1.getDOFPp())));
00783 } else if (sort.equals(HTMLUtils.CHI2HIGHPP)){
00784 CutBand band1 = (CutBand)j1.bands.get(CutBand.HI);
00785 CutBand band2 = (CutBand)j2.bands.get(CutBand.HI);
00786 sortResult = (new Double(band2.getChi2Pp()/band2.getDOFPp()) )
00787 .compareTo((new Double(band1.getChi2Pp()/band1.getDOFPp())));
00788 } else if (sort.equals(HTMLUtils.CHI2LOWPP)){
00789 CutBand band1 = (CutBand)j1.bands.get(CutBand.LO);
00790 CutBand band2 = (CutBand)j2.bands.get(CutBand.LO);
00791 sortResult = (new Double(band2.getChi2Pp()/band2.getDOFPp()) )
00792 .compareTo((new Double(band1.getChi2Pp()/band1.getDOFPp())));
00793 } else if (sort.equals(HTMLUtils.CHI2SHAPEPP)){
00794 CutBand band1 = (CutBand)j1.bands.get(CutBand.SHAPE);
00795 CutBand band2 = (CutBand)j2.bands.get(CutBand.SHAPE);
00796 sortResult = (new Double(band2.getChi2Pp()/band2.getDOFPp()) )
00797 .compareTo((new Double(band1.getChi2Pp()/band1.getDOFPp())));
00798 } else if (sort.equals(HTMLUtils.CHI2CHARMPP)){
00799 CutBand band1 = (CutBand)j1.bands.get(CutBand.CHARM);
00800 CutBand band2 = (CutBand)j2.bands.get(CutBand.CHARM);
00801 sortResult = (new Double(band2.getChi2Pp()/band2.getDOFPp()) )
00802 .compareTo((new Double(band1.getChi2Pp()/band1.getDOFPp())));
00803 */
00804
00805 }
00806 } catch (NumberFormatException e){
00807 System.out.println("Fit: number format exception in sorting of results by "
00808 + sort);
00809 } catch (JetWebException e1){
00810 System.out.println("Fit: JetWebException thrown "
00811 + sort);
00812 e1.printStackTrace(System.out);
00813 } catch (NullPointerException e2){
00814 System.out.println("Fit:NullPointerException in sorting of results by "
00815 + sort);
00816 e2.printStackTrace(System.out);
00817 System.out.println("Fit ID 1:"+j1.getId());
00818 System.out.println("Fit ID 2:"+j2.getId());
00819 }
00820 return -1*sortResult;
00821 }
00822 };
00823
00824 Collections.sort(fitList,listSort);
00825 return fitList;
00826
00827 }
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Unique ID of the fit
Implements Storeable. Definition at line 157 of file Fit.java. Referenced by HTMLFitWriter.comparePlots(), Searcher.doGet(), Fit.Fit(), FittedPlot.getChi2(), Fit.getChi2(), Fit.getFits(), CombinedPaper.getFittedPlots(), Fit.getModel(), Fit.getPlotSelection(), HTMLFitWriter.startPaperComparison(), Fit.store(), HTMLFitWriter.writeFitPage(), and HTMLPaperWriter.writeGraphics(). 00157 { return fitId; }
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Provides a copy of all the papers concerned with this result.
Definition at line 217 of file Fit.java. References Fit.fill(), Fit.mcPapers, Fit.populateMCPapers(), and Fit.populatePapers(). Referenced by HTMLFitWriter.makeComparison(). 00217 {
00218
00219 fill();
00220 if (mcPapers.isEmpty()){
00221 populateMCPapers();
00222 populatePapers();
00223 }
00224 Map<Integer,Paper> retn = new HashMap<Integer,Paper>();
00225 retn.putAll(mcPapers);
00226 return retn;
00227 }
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Return the model used in this fit. Definition at line 172 of file Fit.java. References Fit.fill(), Fit.getId(), Fit.model, and Fit.modelId. Referenced by Fit.getFits(), FittedPlot.getMCProcessType(), Fit.populateMCPapers(), Fit.populatePapers(), and HTMLFitWriter.writeCompareFitsPage(). 00172 {
00173
00174 if(getId() >= 0 ) fill();
00175 if (modelId<0) return null;
00176 try {
00177 if (model==null){
00178 model=new Model(modelId);
00179 }
00180 } catch (JetWebException e){
00181 throw e;
00182 }
00183 return model;
00184 }
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Definition at line 229 of file Fit.java. References Fit.fill(), Fit.papers_, and Fit.populatePapers(). 00229 {
00230
00231 fill();
00232 if(papers_.isEmpty()){
00233 populatePapers();
00234 }
00235
00236 HashMap<Integer, CombinedPaper> retn =
00237 new HashMap<Integer, CombinedPaper>();
00238
00239 retn.putAll(papers_);
00240 return retn;
00241 }
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Return the PlotSelection for this fit. Definition at line 189 of file Fit.java. References Fit.fill(), and Fit.getId().
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Scale factor for the Job Result data Definition at line 160 of file Fit.java. References Fit.fill(). Referenced by CombinedPaper.CombinedPaper(), and FittedPlot.FittedPlot(). 00160 {
00161 fill();
00162 return bestScale;
00163 }
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Scale factor for the Job Result data Definition at line 168 of file Fit.java. 00168 { return selection;}
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Definition at line 401 of file Fit.java. References Fit.mcPapers. Referenced by Fit.Fit(). 00401 {
00402
00403 mcPapers=new HashMap<Integer,Paper>();
00404
00405 }
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Definition at line 362 of file Fit.java. References CombinedPaper.getFittedPlots(), PlotSelection.getPlotIds(), Fit.mcPapers, Fit.papers_, Fit.selection, FittedPlot.setFit(), CombinedPaper.setFit(), and FittedPlot.toDB(). Referenced by Fit.store(). 00362 {
00363
00364 Vector<Integer> allPlots = selection.getPlotIds();
00365
00366 //Insert plots using new CombinedPaper:
00367
00368 for(Map.Entry<Integer, CombinedPaper> entry: papers_.entrySet()){
00369 CombinedPaper paper = entry.getValue();
00370 paper.setFit(this);
00371 for(FittedPlot plot: paper.getFittedPlots()){
00372 //Uncomment this line to enable storage of
00373 // FittedPlots from new Combined Papers
00374 //plot.toDB();
00375 }
00376 }
00377
00378 //using old method
00379
00380 // Loop over papers.
00381 for (Paper mcPaper : mcPapers.values()){
00382
00383 //Iterator<DataPlot> mcPlotList = mcPaper.getPlots().iterator();
00384
00385 //while (mcPlotList.hasNext()){
00386 for (DataPlot plot : mcPaper.getPlots()){
00387 //FittedPlot mcPlot = (FittedPlot)mcPlotList.next();
00388 if(allPlots.contains(plot.getId())){
00389 System.out.println
00390 ("Saving plot "+ plot.getNumber() +
00391 " from paper " + mcPaper.getId());
00392
00393 FittedPlot mcPlot = (FittedPlot)plot;
00394 mcPlot.setFit(this);
00395 mcPlot.toDB();
00396 }
00397 }
00398 }
00399 }
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Flag allowing this job result to be rendered invalid if processing errors occur. Definition at line 209 of file Fit.java. References Fit.fill(). Referenced by Fit.getFits(). 00209 {
00210 fill();
00211 return valid_; }
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Definition at line 340 of file Fit.java. References Fit.getModel(), and Fit.mcPapers. Referenced by Fit.fill(), and Fit.getMCPapers(). 00340 {
00341
00342 System.out.println("Fit: Getting MC papers");
00343
00344 /*
00345 for (Paper dataPaper : PaperBank.getPapers()){
00346 Paper mcPaper = null;
00347 mcPaper = new Paper(dataPaper,getModel());
00348 if (mcPaper.getPlots()!=null && mcPaper.getPlots().iterator().hasNext()){
00349 mcPapers.put(new Integer(mcPaper.getId()),mcPaper);
00350 }
00351 }
00352 */
00353 System.out.println("+++ populating mcpapers +++");
00354 mcPapers = DBPlotManager.getPredictedPapers(getModel());
00355 System.out.println("+++ done +++");
00356 return;
00357 }
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Definition at line 328 of file Fit.java. References RealPaper.getId(), Fit.getModel(), CombinedPaper.getNPredictedPlots(), CombinedPaper.getRealPaper(), and Fit.papers_. Referenced by Fit.fill(), Fit.getMCPapers(), and Fit.getPapers(). 00328 {
00329
00330 for(RealPaper realPaper: PaperBank.getRealPapers()){
00331 CombinedPaper newPaper = new CombinedPaper(realPaper, getModel());
00332 if(newPaper.getNPredictedPlots()!=0){
00333 papers_.put(newPaper.getRealPaper().getId(), newPaper);
00334 }
00335 }
00336
00337 return;
00338 }
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Populate the object in memory from the database. Return true if the information retrieved is up to date. Implements Storeable. Definition at line 589 of file Fit.java. Referenced by Fit.fill(). 00589 {
00590
00591 String result = DBFitManager.selectFromDB(this);
00592
00593 boolean uptodate = result.equals(DBFitManager.SUCCESS);
00594 System.out.println(result);
00595 return uptodate;
00596 }
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Sets the total chi2 and DoF Definition at line 413 of file Fit.java. References DataPlot.chi2. 00413 {
00414 this.chi2[0] = chi2[0];
00415 this.chi2[1] = chi2[1];
00416 }
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Date of the fit Definition at line 147 of file Fit.java. References Fit.date. 00147 { date = d;}
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Unique ID of the fit Definition at line 150 of file Fit.java. References Fit.fitId. 00150 { fitId = id;}
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Set the model Id. Should only be access by DB method. Definition at line 204 of file Fit.java. References Fit.modelId. 00204 { modelId=newId;}
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Set the PlotSelection. Definition at line 197 of file Fit.java. References Fit.selection. 00197 {
00198 selection = sel;
00199 }
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Scale factor for the Job Result data Definition at line 165 of file Fit.java. References Fit.bestScale. 00165 { bestScale = d;}
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Write the object in memory to the database. If the ID does not exist in the DB the object is inserted as a new entry. If the ID exists, that entry is updated.
Implements Storeable. Definition at line 598 of file Fit.java. References Fit.fitId, PlotSelection.getId(), Model.getId(), Fit.getId(), Fit.insertPlots(), Fit.model, and Fit.selection. Referenced by Fit.fill(). 00598 {
00599
00600 if (!valid_) {
00601 throw new JetWebException("Attempt to store invalid fit!","ID:"+getId());
00602 }
00603
00604 System.out.println("Storing fit");
00605
00606 boolean existed = (getId()>0);
00607
00608 System.out.println("Fit ID = "+getId());
00609 System.out.println("fit already existed = "+existed);
00610
00611 // If a row existed before. Delete it, and everything
00612 // associated with it.
00613
00614 if (existed) DBFitManager.deleteAll(getId());
00615 // If this fails, the fitId will be set to 0
00616
00617 DBFitManager.addFit(this);
00618
00619 if (fitId!=0){
00620
00621 System.out.println("inserting plots");
00622
00623 // Insert the plots.
00624 insertPlots();
00625
00626 } else {
00627 throw new JetWebException("Fit.store:Error determining fitId! "
00628 ,"ModelId="+model.getId()
00629 +", PlotSelection="+selection.getId());
00630 }
00631
00632 System.out.println("returning from store method");
00633
00634
00635 return existed;
00636 }
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Update the fit.
Definition at line 565 of file Fit.java. References Fit.fill(), and Fit.fitId. Referenced by ServletUtils.editFit(), and JobUtils.updateJobs(). 00565 {
00566
00567 try {
00568
00569 System.out.println("Fit: Deleting graphics Files ");
00570 File dir = new File(JetWebConfig.rootDirectory+"/"
00571 +"/"+JetWebConfig.plotCacheDirName
00572 +"/"+fitId);
00573 FileUtils.deleteDirectory(dir);
00574
00575 //fit = new Fit(fitId);
00576 this.forceUpdate();
00577 fill();
00578 } catch (JetWebException e) {
00579 System.out.println("Failed in attempt to force update: "+e);
00580 e.printStackTrace();
00581 throw e;
00582 } catch (IOException e) {
00583 System.out.println("Failed in attempt to force update: "+e);
00584 e.printStackTrace();
00585 throw new JetWebException(e);
00586 }
00587 }
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Zero all the data in this fit. Definition at line 527 of file Fit.java. References Fit.fitId. 00527 {
00528 DBFitManager.zeroFit(fitId);
00529 }
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Definition at line 59 of file Fit.java. Referenced by Fit.doFit(), and Fit.setScale(). |
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Definition at line 64 of file Fit.java. Referenced by Fit.doFit(), and Fit.getChi2(). |
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Definition at line 58 of file Fit.java. Referenced by Fit.setDate(). |
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Definition at line 56 of file Fit.java. Referenced by Fit.delete(), Fit.doFit(), Fit.fill(), Fit.Fit(), Fit.setId(), Fit.store(), Fit.update(), and Fit.zero(). |
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Definition at line 62 of file Fit.java. Referenced by Fit.fill(), and Fit.forceUpdate(). |
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Definition at line 53 of file Fit.java. Referenced by Fit.doFit(), Fit.fill(), Fit.getMCPapers(), Fit.init(), Fit.insertPlots(), and Fit.populateMCPapers(). |
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Definition at line 50 of file Fit.java. Referenced by Fit.Fit(), Fit.getChi2(), Fit.getFits(), Fit.getModel(), and Fit.store(). |
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Definition at line 51 of file Fit.java. Referenced by Fit.Fit(), Fit.getModel(), and Fit.setModelId(). |
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Initial value:
new HashMap<Integer CombinedPaper>()
Definition at line 54 of file Fit.java. Referenced by Fit.doFit(), Fit.getPapers(), Fit.insertPlots(), and Fit.populatePapers(). |
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Definition at line 52 of file Fit.java. Referenced by Fit.fill(), Fit.Fit(), Fit.getChi2(), Fit.getFits(), Fit.insertPlots(), Fit.setPlotSelection(), and Fit.store(). |
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Definition at line 57 of file Fit.java. Referenced by Fit.fill(), and Fit.forceUpdate(). |
Generated Wed Jan 17 09:14:27 GMT 2007